Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
recD_2Exodeoxyribonuclease V, alpha chain. (894 aa)    
Predicted Functional Partners:
KRN46089.1
Hypothetical protein.
  
   0.926
recQ_1
ATP-dependent DNA helicase RecQ.
  
 
 0.866
addA
ATP-dependent exoDNAse (exonuclease V) beta subunit; ATP-dependent DNA helicase.
  
 
 0.862
pcrA_5
ATP-dependent DNA helicase PcrA.
  
 
 0.846
dnaN_1
DNA-directed DNA polymerase III, beta chain.
  
 
 0.837
KRN46088.1
Phosphoglycerate mutase.
 
    0.821
polA_3
DNA polymerase I.
  
 
 0.766
recA_1
Recombinase A.
   
 
 0.751
sbcC_1
Exonuclease SbcC.
   
 
 0.750
sbcD_1
Exonuclease.
   
 
 0.731
Your Current Organism:
Weissella viridescens
NCBI taxonomy Id: 1629
Other names: ATCC 12706, BCRC 11650, CCM 56, CCRC 11650, CCRC:11650, CCUG 21533, CCUG 30502, CECT 283, CIP 102810, DSM 20410, IAM 13546, LMG 3507, LMG:3507, Lactobacillus viridescens, NCCB 71015, NCIB 8965, NCIMB 8965, NCTC 13645, NCTC 13770, W. viridescens
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