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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN46094.1Hypothetical protein. (319 aa)    
Predicted Functional Partners:
xpsE
ComG operon protein 1.
  
 
 0.995
KRN46095.1
Hypothetical protein.
 
  
 0.986
comEA_2
Hypothetical protein.
  
  
 0.748
KRN46885.1
ABC transporter EcsB.
 
     0.709
KRN46099.1
Adenine-specific DNA methylase.
 
     0.701
isaA_3
Peptidoglycan-binding lysm.
    
   0.662
isaA_4
Hypothetical protein.
    
   0.662
KRN45864.1
Superfamily ii dna rna helicase.
   
  
 0.604
KRN46080.1
Cell division septal protein.
 
     0.600
KRN46096.1
Hypothetical protein.
       0.583
Your Current Organism:
Weissella viridescens
NCBI taxonomy Id: 1629
Other names: ATCC 12706, BCRC 11650, CCM 56, CCRC 11650, CCRC:11650, CCUG 21533, CCUG 30502, CECT 283, CIP 102810, DSM 20410, IAM 13546, LMG 3507, LMG:3507, Lactobacillus viridescens, NCCB 71015, NCIB 8965, NCIMB 8965, NCTC 13645, NCTC 13770, W. viridescens
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.