STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htrATrypsin-like serine protease. (395 aa)    
Predicted Functional Partners:
regX3
Response regulator.
 
  
 0.929
glpK_4
Glycerol kinase.
   
 0.745
glpK_8
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.745
glpK_6
Glycerol kinase.
   
 0.745
KRN45949.1
Beta-lactamase superfamily I metal-dependent hydrolase.
  
  
 0.716
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.715
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.679
yycF
Response regulator.
 
  
 0.648
dnaK_2
Hsp70.
  
 
 0.647
KRN45950.1
Hypothetical protein.
  
    0.644
Your Current Organism:
Weissella viridescens
NCBI taxonomy Id: 1629
Other names: ATCC 12706, BCRC 11650, CCM 56, CCRC 11650, CCRC:11650, CCUG 21533, CCUG 30502, CECT 283, CIP 102810, DSM 20410, IAM 13546, LMG 3507, LMG:3507, Lactobacillus viridescens, NCCB 71015, NCIB 8965, NCIMB 8965, NCTC 13645, NCTC 13770, W. viridescens
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