STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cva_00020Hypothetical protein. (170 aa)    
Predicted Functional Partners:
Cva_00018
Hypothetical protein.
 
     0.868
bamE
Outer membrane protein assembly factor BamE.
  
     0.773
Cva_01156
Hypothetical protein.
  
     0.767
bamB
Outer membrane protein assembly factor BamB precursor.
  
    0.750
Cva_01449
Hypothetical protein.
  
     0.735
Cva_01272
Lipopolysaccharide-assembly, LptC-related.
  
     0.727
Cva_01538
ATPase MipZ.
  
     0.709
leuS
leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.690
spoVD
Stage V sporulation protein D.
  
     0.666
surA
Chaperone SurA precursor.
  
     0.666
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.