STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1-hpahP-hydroxyphenylacetate 3-hydroxylase, reductase component. (159 aa)    
Predicted Functional Partners:
Cva_01090
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
    
 0.741
mmgC
acyl-CoA dehydrogenase.
  
 
 0.719
fdxA
Ferredoxin-2; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
  
  0.668
Cva_00100
Hypothetical protein.
    
 0.659
yjjG
Pyrimidine 5'-nucleotidase YjjG.
     
 0.610
Cva_00232
PAP2 superfamily protein.
     
 0.609
xseB
Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
 
     0.557
Cva_01263
glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
  
 
 0.470
Cva_01432
Glyoxalase-like domain protein.
  
 
 0.470
icd
Isocitrate dehydrogenase; NADP.
       0.449
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.