STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cva_00214Hypothetical protein. (2586 aa)    
Predicted Functional Partners:
Cva_00215
Hypothetical protein.
       0.773
Cva_01434
Hypothetical protein.
  
 0.700
Cva_00349
Hypothetical protein.
  
 
 0.656
Cva_00216
Hypothetical protein.
       0.509
gmr
Cyclic di-GMP phosphodiesterase Gmr.
     
 0.492
Cva_00917
Blue-light-activated protein.
     
 0.491
apxIA
RTX-I toxin determinant A from serotypes 1/9.
  
 
 0.479
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
   0.470
cph2_1
Phytochrome-like protein cph2.
      
 0.461
Cva_00957
Hypothetical protein.
  
 
 0.447
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.