STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnB_1Asparagine synthetase [glutamine-hydrolyzing] 1. (583 aa)    
Predicted Functional Partners:
pglH
galNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase.
 
  
  0.845
Cva_01617
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
 
  
 0.841
asnB_2
Asparagine synthetase [glutamine-hydrolyzing] 1.
  
  
 
0.827
Cva_01372
Aspartate aminotransferase.
     
 0.805
rfaF_1
ADP-heptose--LPS heptosyltransferase 2.
 
     0.801
lysC
Aspartokinase 2; Belongs to the aspartokinase family.
  
 
 0.773
putA
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
 0.665
dtpA_2
Dipeptide and tripeptide permease A.
      0.623
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
     
 0.599
nodM
Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.516
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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