STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cva_00538Hypothetical protein. (114 aa)    
Predicted Functional Partners:
Cva_00539
Integrase core domain protein.
     0.938
Cva_00289
Integrase core domain protein.
 
     0.820
Cva_00692
Integrase core domain protein.
 
     0.820
Cva_00558
Hypothetical protein.
 
     0.814
Cva_00588
Hypothetical protein.
 
     0.814
Cva_00439
Integrase core domain protein.
 
     0.797
Cva_00583
transposase/IS protein.
  
    0.753
Cva_00292
transposase/IS protein.
  
    0.752
Cva_00582
transposase/IS protein.
  
    0.749
Cva_00361
Integrase core domain protein.
 
     0.646
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.