Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Cva_00673 | rph | Cva_00673 | Cva_00568 | Hypothetical protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.776 |
| Cva_01695 | rph | Cva_01695 | Cva_00568 | Non-canonical purine NTP pyrophosphatase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.969 |
| Cva_01695 | rppH | Cva_01695 | Cva_01416 | Non-canonical purine NTP pyrophosphatase. | RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.704 |
| rhlE_1 | rnd_1 | Cva_00476 | Cva_01245 | ATP-dependent RNA helicase RhlE. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.906 |
| rhlE_1 | rnd_2 | Cva_00476 | Cva_01270 | ATP-dependent RNA helicase RhlE. | Ribonuclease D. | 0.900 |
| rhlE_1 | rnr | Cva_00476 | Cva_00010 | ATP-dependent RNA helicase RhlE. | Ribonuclease R. | 0.582 |
| rhlE_1 | rph | Cva_00476 | Cva_00568 | ATP-dependent RNA helicase RhlE. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.909 |
| rhlE_1 | rppH | Cva_00476 | Cva_01416 | ATP-dependent RNA helicase RhlE. | RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.971 |
| rhlE_1 | rpsA | Cva_00476 | Cva_01567 | ATP-dependent RNA helicase RhlE. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.968 |
| rhlE_1 | rpsK | Cva_00476 | Cva_00626 | ATP-dependent RNA helicase RhlE. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.961 |
| rhlE_2 | rnd_1 | Cva_01298 | Cva_01245 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.906 |
| rhlE_2 | rnd_2 | Cva_01298 | Cva_01270 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Ribonuclease D. | 0.900 |
| rhlE_2 | rnr | Cva_01298 | Cva_00010 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Ribonuclease R. | 0.582 |
| rhlE_2 | rph | Cva_01298 | Cva_00568 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.909 |
| rhlE_2 | rppH | Cva_01298 | Cva_01416 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.971 |
| rhlE_2 | rpsA | Cva_01298 | Cva_01567 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.968 |
| rhlE_2 | rpsK | Cva_01298 | Cva_00626 | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.961 |
| rnd_1 | rhlE_1 | Cva_01245 | Cva_00476 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | ATP-dependent RNA helicase RhlE. | 0.906 |
| rnd_1 | rhlE_2 | Cva_01245 | Cva_01298 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.906 |
| rnd_1 | rnr | Cva_01245 | Cva_00010 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | Ribonuclease R. | 0.938 |
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