STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bamA_2Outer membrane protein assembly factor BamA precursor. (587 aa)    
Predicted Functional Partners:
bamA_3
Outer membrane protein assembly factor BamA precursor.
     0.976
bamD
Outer membrane protein assembly factor BamD precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.947
bamB
Outer membrane protein assembly factor BamB precursor.
 
 
 0.946
bamE
Outer membrane protein assembly factor BamE.
  
 
 
 0.878
Cva_00750
Hypothetical protein.
  
 
 0.813
Cva_00645
Outer membrane protein; OmpH-like.
  
  
 0.774
mmpA_2
Metalloprotease MmpA.
 
  
 0.770
lpxD_2
UDP-3-O-acylglucosamine N-acyltransferase.
  
    0.767
surA
Chaperone SurA precursor.
  
 
 0.758
lolE
Lipoprotein-releasing system transmembrane protein LolE.
 
   
 0.730
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.