STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cva_00917Blue-light-activated protein. (731 aa)    
Predicted Functional Partners:
Cva_00349
Hypothetical protein.
  
 0.999
fadB
Putative enoyl-CoA hydratase.
   
 0.999
fixL
Sensor protein FixL.
 
0.999
ompR
Transcriptional regulatory protein OmpR.
 
 0.999
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
   
 0.999
cph2_1
Phytochrome-like protein cph2.
 
 0.999
ctrA
Cell cycle response regulator CtrA.
 0.999
rcp1_1
Response regulator rcp1.
 
 0.999
cph1
Phytochrome-like protein cph1.
0.999
gmr
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.999
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.