STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuBHigh-affinity zinc uptake system membrane protein ZnuB. (265 aa)    
Predicted Functional Partners:
znuC
Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 0.999
znuA
High-affinity zinc uptake system protein ZnuA precursor; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.983
Cva_00028
Putative periplasmic iron-binding protein precursor; Belongs to the bacterial solute-binding protein 9 family.
 
 0.956
yusV
Putative siderophore transport system ATP-binding protein YusV.
  
 0.925
yjjG
Pyrimidine 5'-nucleotidase YjjG.
       0.718
tag_1
DNA-3-methyladenine glycosylase 1.
       0.713
mntB
Manganese transport system membrane protein MntB.
  
  
 
0.463
artQ
Arginine transport system permease protein ArtQ.
   
 
 0.455
Cva_01025
5-formyltetrahydrofolate cyclo-ligase family protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.421
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.