STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiBPutative protein kinase UbiB. (445 aa)    
Predicted Functional Partners:
Cva_00525
Hypothetical protein.
 
     0.777
ttuE
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.774
Cva_01283
Hypothetical protein; Belongs to the Nudix hydrolase family.
 
     0.651
Cva_01577
Hypothetical protein; COQ9.
   
 
 0.607
Cva_01282
O-acetylserine/cysteine export protein.
       0.603
Cva_00917
Blue-light-activated protein.
   
 
 0.576
Cva_00709
Hypothetical protein.
  
     0.519
Cva_01295
Hypothetical protein.
  
     0.511
ubiG
Ubiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
  
 
 0.502
ratA
Ribosome association toxin RatA.
    
 
 0.497
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.