STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cva_01418UMP phosphatase. (309 aa)    
Predicted Functional Partners:
corC
Magnesium and cobalt efflux protein CorC.
       0.639
Cva_01420
Transcriptional regulator BolA; Belongs to the BolA/IbaG family.
       0.639
Cva_00244
Hypothetical protein.
  
     0.601
Cva_01417
Cyclic nucleotide-binding domain protein.
       0.560
cpxA
Sensor protein CpxA.
  
 
   0.511
Cva_01302
Hypothetical protein.
  
     0.494
atpF2
ATP synthase subunit b 2.
  
 
  0.491
yjjG
Pyrimidine 5'-nucleotidase YjjG.
   
 
 0.450
atpF
ATP synthase subunit b precursor; Belongs to the ATPase B chain family.
  
 
  0.447
pgsA2
Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase 2; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
  0.414
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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