STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cva_01457Putative conjugal transfer protein/MT3759. (459 aa)    
Predicted Functional Partners:
Cva_01456
Bacterial type II secretion system protein F domain protein.
 
  
 0.990
pulD
Type II secretion system protein D precursor; Belongs to the bacterial secretin family.
  
 0.968
Cva_01458
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
  
 0.952
Cva_01461
Hypothetical protein.
 
  
 0.950
Cva_01551
tadE-like protein.
 
    0.701
Cva_01549
Hypothetical protein.
 
  
 0.677
Cva_01462
Hypothetical protein.
     
 0.618
Cva_01463
Cellulose synthase subunit BcsC.
 
  
 0.610
Cva_01459
pilus_cpaD.
       0.598
Cva_00454
Cellulose synthase subunit BcsC; Belongs to the bacterial secretin family.
 
  
 0.456
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.