STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bamBOuter membrane protein assembly factor BamB precursor. (451 aa)    
Predicted Functional Partners:
bamD
Outer membrane protein assembly factor BamD precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.972
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
 0.960
surA
Chaperone SurA precursor.
  
 
 0.951
bamA_2
Outer membrane protein assembly factor BamA precursor.
 
 
 0.946
bamA_1
Outer membrane protein assembly factor BamA precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.942
bamA_3
Outer membrane protein assembly factor BamA precursor.
  
 
 0.923
bamE
Outer membrane protein assembly factor BamE.
  
 
 
 0.889
Cva_00917
Blue-light-activated protein.
    
 0.752
Cva_00020
Hypothetical protein.
  
    0.750
Cva_01449
Hypothetical protein.
  
     0.701
Your Current Organism:
Caedimonas varicaedens
NCBI taxonomy Id: 1629334
Other names: ATCC 30637, ATCC 50168 [[Caedibacter caryophilus]], C. varicaedens, Caedibacter caryophila, Caedibacter caryophilus, Caedibacter macronucleorum, Caedibacter varicaedens, strain 221 [[Caedibacter caryophilus]], strain 7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.