STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI54070.1poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (391 aa)    
Predicted Functional Partners:
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.848
SFI96365.1
Dihydrodipicolinate reductase.
 
    0.804
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
    0.770
SFI70072.1
tRNA nucleotidyltransferase (CCA-adding enzyme).
  
  
 
0.673
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
 
 
 0.667
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.617
SFI66879.1
RNA helicase HrpA.
 
   0.605
SFI40773.1
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family.
  
   0.603
SFI59496.1
tRNA(Ile)-lysidine synthase TilS/MesJ; Belongs to the TtcA family.
 
  
 0.572
SFI92563.1
tRNA(Arg) A34 adenosine deaminase TadA.
   
 
 0.568
Your Current Organism:
Treponema bryantii
NCBI taxonomy Id: 163
Other names: ATCC 33254, T. bryantii, strain RUS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.