Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFI44013.1 | SFI60252.1 | SAMN04487775_101388 | SAMN04487775_10366 | Cystathionine gamma-synthase. | Aspartate kinase. | 0.981 |
SFI44013.1 | SFI64100.1 | SAMN04487775_101388 | SAMN04487775_103267 | Cystathionine gamma-synthase. | 5,10-methylenetetrahydrofolate reductase (NAD(P)). | 0.922 |
SFI44013.1 | SFI64122.1 | SAMN04487775_101388 | SAMN04487775_103268 | Cystathionine gamma-synthase. | Methionine synthase (B12-independent). | 0.968 |
SFI44013.1 | SFI82723.1 | SAMN04487775_101388 | SAMN04487775_106214 | Cystathionine gamma-synthase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.983 |
SFI44013.1 | SFI99247.1 | SAMN04487775_101388 | SAMN04487775_11046 | Cystathionine gamma-synthase. | Hypothetical protein. | 0.604 |
SFI44013.1 | glyA | SAMN04487775_101388 | SAMN04487775_10859 | Cystathionine gamma-synthase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.581 |
SFI44013.1 | metAA | SAMN04487775_101388 | SAMN04487775_105104 | Cystathionine gamma-synthase. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.967 |
SFI44013.1 | metG | SAMN04487775_101388 | SAMN04487775_102325 | Cystathionine gamma-synthase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.914 |
SFI44013.1 | metK | SAMN04487775_101388 | SAMN04487775_11056 | Cystathionine gamma-synthase. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.877 |
SFI44013.1 | metN | SAMN04487775_101388 | SAMN04487775_105162 | Cystathionine gamma-synthase. | D-methionine transport system ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.803 |
SFI60252.1 | SFI44013.1 | SAMN04487775_10366 | SAMN04487775_101388 | Aspartate kinase. | Cystathionine gamma-synthase. | 0.981 |
SFI60252.1 | SFI64100.1 | SAMN04487775_10366 | SAMN04487775_103267 | Aspartate kinase. | 5,10-methylenetetrahydrofolate reductase (NAD(P)). | 0.980 |
SFI60252.1 | SFI64122.1 | SAMN04487775_10366 | SAMN04487775_103268 | Aspartate kinase. | Methionine synthase (B12-independent). | 0.975 |
SFI60252.1 | SFI82723.1 | SAMN04487775_10366 | SAMN04487775_106214 | Aspartate kinase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.988 |
SFI60252.1 | SFI99247.1 | SAMN04487775_10366 | SAMN04487775_11046 | Aspartate kinase. | Hypothetical protein. | 0.931 |
SFI60252.1 | glyA | SAMN04487775_10366 | SAMN04487775_10859 | Aspartate kinase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.930 |
SFI60252.1 | metAA | SAMN04487775_10366 | SAMN04487775_105104 | Aspartate kinase. | Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. | 0.983 |
SFI60252.1 | metG | SAMN04487775_10366 | SAMN04487775_102325 | Aspartate kinase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.703 |
SFI60252.1 | metK | SAMN04487775_10366 | SAMN04487775_11056 | Aspartate kinase. | Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.835 |
SFI60252.1 | metN | SAMN04487775_10366 | SAMN04487775_105162 | Aspartate kinase. | D-methionine transport system ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.775 |
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