STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI68629.1sigma-B regulation protein RsbU (phosphoserine phosphatase). (557 aa)    
Predicted Functional Partners:
SFI81216.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.986
SFI68611.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 0.977
SFI54525.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 0.973
SFI92884.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.971
SFI54566.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
 
 0.966
SFI92042.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
 0.955
SFI43052.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 0.944
SFI38438.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.940
SFI68562.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
0.936
SFI76119.1
Anti-anti-sigma factor.
 
 0.936
Your Current Organism:
Treponema bryantii
NCBI taxonomy Id: 163
Other names: ATCC 33254, T. bryantii, strain RUS-1
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