Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFI43718.1 | SFI63211.1 | SAMN04487775_101371 | SAMN04487775_103216 | Glutamine synthetase. | NADPH-dependent glutamate synthase beta chain. | 0.563 |
SFI43718.1 | SFI78950.1 | SAMN04487775_101371 | SAMN04487775_1062 | Glutamine synthetase. | Uncharacterized conserved protein, DUF1015 family. | 0.567 |
SFI43718.1 | rnfB | SAMN04487775_101371 | SAMN04487775_102248 | Glutamine synthetase. | Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.598 |
SFI44779.1 | SFI66193.1 | SAMN04487775_101437 | SAMN04487775_1048 | Putative hydrolase of the HAD superfamily. | Uridine kinase. | 0.814 |
SFI44779.1 | SFI74558.1 | SAMN04487775_101437 | SAMN04487775_10595 | Putative hydrolase of the HAD superfamily. | Alpha amylase, catalytic domain. | 0.474 |
SFI44779.1 | SFI78950.1 | SAMN04487775_101437 | SAMN04487775_1062 | Putative hydrolase of the HAD superfamily. | Uncharacterized conserved protein, DUF1015 family. | 0.457 |
SFI63211.1 | SFI43718.1 | SAMN04487775_103216 | SAMN04487775_101371 | NADPH-dependent glutamate synthase beta chain. | Glutamine synthetase. | 0.563 |
SFI63211.1 | SFI74558.1 | SAMN04487775_103216 | SAMN04487775_10595 | NADPH-dependent glutamate synthase beta chain. | Alpha amylase, catalytic domain. | 0.706 |
SFI63211.1 | SFI78950.1 | SAMN04487775_103216 | SAMN04487775_1062 | NADPH-dependent glutamate synthase beta chain. | Uncharacterized conserved protein, DUF1015 family. | 0.793 |
SFI63211.1 | rnfB | SAMN04487775_103216 | SAMN04487775_102248 | NADPH-dependent glutamate synthase beta chain. | Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.954 |
SFI66193.1 | SFI44779.1 | SAMN04487775_1048 | SAMN04487775_101437 | Uridine kinase. | Putative hydrolase of the HAD superfamily. | 0.814 |
SFI66193.1 | SFI74558.1 | SAMN04487775_1048 | SAMN04487775_10595 | Uridine kinase. | Alpha amylase, catalytic domain. | 0.548 |
SFI66193.1 | SFI78950.1 | SAMN04487775_1048 | SAMN04487775_1062 | Uridine kinase. | Uncharacterized conserved protein, DUF1015 family. | 0.442 |
SFI66193.1 | SFI82234.1 | SAMN04487775_1048 | SAMN04487775_106184 | Uridine kinase. | Putative hydrolase of the HAD superfamily. | 0.814 |
SFI74558.1 | SFI44779.1 | SAMN04487775_10595 | SAMN04487775_101437 | Alpha amylase, catalytic domain. | Putative hydrolase of the HAD superfamily. | 0.474 |
SFI74558.1 | SFI63211.1 | SAMN04487775_10595 | SAMN04487775_103216 | Alpha amylase, catalytic domain. | NADPH-dependent glutamate synthase beta chain. | 0.706 |
SFI74558.1 | SFI66193.1 | SAMN04487775_10595 | SAMN04487775_1048 | Alpha amylase, catalytic domain. | Uridine kinase. | 0.548 |
SFI74558.1 | SFI78950.1 | SAMN04487775_10595 | SAMN04487775_1062 | Alpha amylase, catalytic domain. | Uncharacterized conserved protein, DUF1015 family. | 0.475 |
SFI74558.1 | SFI82234.1 | SAMN04487775_10595 | SAMN04487775_106184 | Alpha amylase, catalytic domain. | Putative hydrolase of the HAD superfamily. | 0.464 |
SFI74558.1 | SFJ01285.1 | SAMN04487775_10595 | SAMN04487775_11111 | Alpha amylase, catalytic domain. | Hypothetical protein. | 0.586 |
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