STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI86555.1Uncharacterized conserved protein YbbK, DUF523 family. (138 aa)    
Predicted Functional Partners:
SFI86534.1
Nicotinamidase-related amidase.
       0.773
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
    0.683
SFI91744.1
Purine-nucleoside phosphorylase.
    
  0.573
cobB
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
    
  0.546
SFI86511.1
Hypothetical protein.
       0.515
SFI92057.1
dGTPase; Belongs to the dGTPase family. Type 2 subfamily.
    
  0.513
SFI86495.1
Hypothetical protein.
       0.458
SFI86482.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
       0.437
SFI40527.1
Pseudouridine kinase.
 
  
  0.419
Your Current Organism:
Treponema bryantii
NCBI taxonomy Id: 163
Other names: ATCC 33254, T. bryantii, strain RUS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.