STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI57455.1DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains. (254 aa)    
Predicted Functional Partners:
SEI59424.1
PTS system, sucrose-specific IIC component.
  
 
 0.872
SEI55050.1
PTS system, glucose-specific IIC component.
  
 
 0.872
SEJ29941.1
PTS system, D-glucosamine-specific IIC component.
  
 
 0.872
SEJ27221.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.848
SEI57487.1
Peptide deformylase.
       0.773
SEI57514.1
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
SEI57541.1
G/U mismatch-specific uracil-DNA glycosylase.
       0.773
SEJ14011.1
PTS system, maltose and glucose-specific IIC component.
  
 
 0.626
SEI57399.1
Protein involved in ribonucleotide reduction; Belongs to the NrdI family.
       0.547
SEI57429.1
Protein of unknown function.
       0.547
Your Current Organism:
Kandleria vitulina
NCBI taxonomy Id: 1630
Other names: ATCC 27783, CCUG 32236, CIP 103154, DSM 20405, K. vitulina, LMG 18931, LMG:18931, Lactobacillus vitulinus, NRRL B-14854
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