SEI59520.1 protein (Kandleria vitulina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEI59520.1

Amino acid ABC transporter membrane protein, PAAT family. (233 aa)

Predicted Functional Partners:

SEI59569.1

0.998

SEI59546.1

0.996

SEJ05160.1

0.984

SEJ12415.1

0.984

SEJ05281.1

0.983

SEJ05108.1

0.981

SEI97100.1

0.978

SEI66358.1

0.976

SEJ05242.1

0.964

SEJ05255.1

0.812

Your Current Organism:

Kandleria vitulina

NCBI taxonomy Id: 1630
Other names: ATCC 27783, CCUG 32236, CIP 103154, DSM 20405, K. vitulina, LMG 18931, LMG:18931, Lactobacillus vitulinus, NRRL B-14854

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEI59520.1	SEI59546.1	SAMN05216514_101199	SAMN05216514_101200	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.996
SEI59520.1	SEI59569.1	SAMN05216514_101199	SAMN05216514_101201	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.998
SEI59520.1	SEI66358.1	SAMN05216514_101199	SAMN05216514_10257	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.976
SEI59520.1	SEI97100.1	SAMN05216514_101199	SAMN05216514_10716	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.978
SEI59520.1	SEJ05108.1	SAMN05216514_101199	SAMN05216514_10917	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.981
SEI59520.1	SEJ05160.1	SAMN05216514_101199	SAMN05216514_10919	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.984
SEI59520.1	SEJ05242.1	SAMN05216514_101199	SAMN05216514_10923	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.964
SEI59520.1	SEJ05255.1	SAMN05216514_101199	SAMN05216514_10924	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.812
SEI59520.1	SEJ05281.1	SAMN05216514_101199	SAMN05216514_10925	Amino acid ABC transporter membrane protein, PAAT family.	Polar amino acid transport system ATP-binding protein.	0.983
SEI59520.1	SEJ12415.1	SAMN05216514_101199	SAMN05216514_11126	Amino acid ABC transporter membrane protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.984
SEI59546.1	SEI59520.1	SAMN05216514_101200	SAMN05216514_101199	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.996
SEI59546.1	SEI59569.1	SAMN05216514_101200	SAMN05216514_101201	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.995
SEI59546.1	SEI97100.1	SAMN05216514_101200	SAMN05216514_10716	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.778
SEI59546.1	SEJ05108.1	SAMN05216514_101200	SAMN05216514_10917	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.955
SEI59546.1	SEJ05242.1	SAMN05216514_101200	SAMN05216514_10923	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.892
SEI59546.1	SEJ05255.1	SAMN05216514_101200	SAMN05216514_10924	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.978
SEI59569.1	SEI59520.1	SAMN05216514_101201	SAMN05216514_101199	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.998
SEI59569.1	SEI59546.1	SAMN05216514_101201	SAMN05216514_101200	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.995
SEI59569.1	SEI66358.1	SAMN05216514_101201	SAMN05216514_10257	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.974
SEI59569.1	SEI97100.1	SAMN05216514_101201	SAMN05216514_10716	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.839