STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI59876.1Two-component system, sensor histidine kinase YesM. (565 aa)    
Predicted Functional Partners:
SEI59845.1
Two-component system, response regulator YesN.
 
  
  0.969
SEI59974.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
   
 0.919
SEJ22918.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
 
 0.857
SEJ28982.1
Two component transcriptional regulator, LytTR family.
 
 
 0.843
SEJ00531.1
Two component transcriptional regulator, LytTR family.
 
 
 0.831
SEI59825.1
Hypothetical protein.
       0.773
SEJ12654.1
AraC-type DNA-binding protein.
 
  
 0.658
SEI59899.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
    0.587
SEJ04857.1
Transcriptional regulator, LytTR family.
 
 
 0.569
SEI59804.1
Glycogen debranching enzyme, putative.
       0.526
Your Current Organism:
Kandleria vitulina
NCBI taxonomy Id: 1630
Other names: ATCC 27783, CCUG 32236, CIP 103154, DSM 20405, K. vitulina, LMG 18931, LMG:18931, Lactobacillus vitulinus, NRRL B-14854
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.