Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEI68461.1 | SEI68583.1 | SAMN05216514_102140 | SAMN05216514_102144 | Chorismate mutase. | Hypothetical protein. | 0.473 |
SEI68461.1 | SEI68606.1 | SAMN05216514_102140 | SAMN05216514_102145 | Chorismate mutase. | Hypothetical protein. | 0.419 |
SEI68461.1 | aroA | SAMN05216514_102140 | SAMN05216514_102142 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.997 |
SEI68461.1 | aroB | SAMN05216514_102140 | SAMN05216514_102143 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.988 |
SEI68461.1 | aroC | SAMN05216514_102140 | SAMN05216514_102141 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.996 |
SEI68461.1 | aroK | SAMN05216514_102140 | SAMN05216514_102139 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.993 |
SEI68583.1 | SEI68461.1 | SAMN05216514_102144 | SAMN05216514_102140 | Hypothetical protein. | Chorismate mutase. | 0.473 |
SEI68583.1 | SEI68606.1 | SAMN05216514_102144 | SAMN05216514_102145 | Hypothetical protein. | Hypothetical protein. | 0.631 |
SEI68583.1 | aroA | SAMN05216514_102144 | SAMN05216514_102142 | Hypothetical protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.473 |
SEI68583.1 | aroB | SAMN05216514_102144 | SAMN05216514_102143 | Hypothetical protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.473 |
SEI68583.1 | aroC | SAMN05216514_102144 | SAMN05216514_102141 | Hypothetical protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.473 |
SEI68583.1 | aroK | SAMN05216514_102144 | SAMN05216514_102139 | Hypothetical protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.473 |
SEI68606.1 | SEI68461.1 | SAMN05216514_102145 | SAMN05216514_102140 | Hypothetical protein. | Chorismate mutase. | 0.419 |
SEI68606.1 | SEI68583.1 | SAMN05216514_102145 | SAMN05216514_102144 | Hypothetical protein. | Hypothetical protein. | 0.631 |
SEI68606.1 | aroA | SAMN05216514_102145 | SAMN05216514_102142 | Hypothetical protein. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.411 |
SEI68606.1 | aroB | SAMN05216514_102145 | SAMN05216514_102143 | Hypothetical protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.405 |
SEI68606.1 | aroC | SAMN05216514_102145 | SAMN05216514_102141 | Hypothetical protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.403 |
SEI68606.1 | aroK | SAMN05216514_102145 | SAMN05216514_102139 | Hypothetical protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.411 |
aroA | SEI68461.1 | SAMN05216514_102142 | SAMN05216514_102140 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Chorismate mutase. | 0.997 |
aroA | SEI68583.1 | SAMN05216514_102142 | SAMN05216514_102144 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Hypothetical protein. | 0.473 |
page 1 of 3