Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEI55981.1 | SEI69586.1 | SAMN05216514_10163 | SAMN05216514_102181 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hypothetical protein. | 0.991 |
SEI60890.1 | SEI69586.1 | SAMN05216514_101258 | SAMN05216514_102181 | Regulator of protease activity HflC, stomatin/prohibitin superfamily. | Hypothetical protein. | 0.738 |
SEI60890.1 | SEJ20423.1 | SAMN05216514_101258 | SAMN05216514_11413 | Regulator of protease activity HflC, stomatin/prohibitin superfamily. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.729 |
SEI60890.1 | htpG | SAMN05216514_101258 | SAMN05216514_10916 | Regulator of protease activity HflC, stomatin/prohibitin superfamily. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.401 |
SEI69586.1 | SEI55981.1 | SAMN05216514_102181 | SAMN05216514_10163 | Hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.991 |
SEI69586.1 | SEI60890.1 | SAMN05216514_102181 | SAMN05216514_101258 | Hypothetical protein. | Regulator of protease activity HflC, stomatin/prohibitin superfamily. | 0.738 |
SEI69586.1 | SEI83002.1 | SAMN05216514_102181 | SAMN05216514_10485 | Hypothetical protein. | Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.966 |
SEI69586.1 | SEJ01636.1 | SAMN05216514_102181 | SAMN05216514_10842 | Hypothetical protein. | Hypothetical protein. | 0.932 |
SEI69586.1 | SEJ20423.1 | SAMN05216514_102181 | SAMN05216514_11413 | Hypothetical protein. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.728 |
SEI69586.1 | SEJ20824.1 | SAMN05216514_102181 | SAMN05216514_11429 | Hypothetical protein. | TPR repeat. | 0.932 |
SEI69586.1 | SEJ31419.1 | SAMN05216514_102181 | SAMN05216514_12315 | Hypothetical protein. | Serine protease Do. | 0.792 |
SEI69586.1 | glpK | SAMN05216514_102181 | SAMN05216514_1095 | Hypothetical protein. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.968 |
SEI69586.1 | htpG | SAMN05216514_102181 | SAMN05216514_10916 | Hypothetical protein. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.951 |
SEI69586.1 | map | SAMN05216514_102181 | SAMN05216514_104137 | Hypothetical protein. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.758 |
SEI83002.1 | SEI69586.1 | SAMN05216514_10485 | SAMN05216514_102181 | Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Hypothetical protein. | 0.966 |
SEI83002.1 | SEJ20423.1 | SAMN05216514_10485 | SAMN05216514_11413 | Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.883 |
SEI83002.1 | SEJ31419.1 | SAMN05216514_10485 | SAMN05216514_12315 | Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Serine protease Do. | 0.457 |
SEI83002.1 | glpK | SAMN05216514_10485 | SAMN05216514_1095 | Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.541 |
SEI83002.1 | htpG | SAMN05216514_10485 | SAMN05216514_10916 | Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.447 |
SEI83002.1 | map | SAMN05216514_10485 | SAMN05216514_104137 | Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.634 |
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