STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI85319.1Diguanylate cyclase (GGDEF) domain-containing protein. (1012 aa)    
Predicted Functional Partners:
SEI85410.1
Chemotaxis protein methyltransferase CheR/two-component system, chemotaxis family, CheB/CheR fusion protein.
 0.995
SEJ01132.1
Signal transduction histidine kinase.
 0.961
SEI87673.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.960
SEJ01539.1
Putative two-component system response regulator.
 
 
 0.959
SEJ31401.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.940
SEJ34774.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
0.921
SEJ27221.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.914
SEJ09353.1
Signal transduction histidine kinase.
 0.891
SEJ36540.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
     0.880
SEJ00963.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.840
Your Current Organism:
Kandleria vitulina
NCBI taxonomy Id: 1630
Other names: ATCC 27783, CCUG 32236, CIP 103154, DSM 20405, K. vitulina, LMG 18931, LMG:18931, Lactobacillus vitulinus, NRRL B-14854
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