STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI81611.1Subtilase family protein. (260 aa)    
Predicted Functional Partners:
SEI96754.1
Ig-like domain (group 2).
  
 0.939
SEI67601.1
Hypothetical protein.
  
 0.906
SEI81577.1
Hypothetical protein.
       0.773
SEI81480.1
Competence protein ComFA.
       0.768
SEI81511.1
Competence protein ComFC.
       0.768
SEI81544.1
Hypothetical protein.
       0.768
SEI74693.1
DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.608
SEI57168.1
Preprotein translocase subunit SecY.
    
   0.571
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.571
SEI81439.1
Hypothetical protein.
       0.514
Your Current Organism:
Kandleria vitulina
NCBI taxonomy Id: 1630
Other names: ATCC 27783, CCUG 32236, CIP 103154, DSM 20405, K. vitulina, LMG 18931, LMG:18931, Lactobacillus vitulinus, NRRL B-14854
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.