SEJ24499.1 protein (Kandleria vitulina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEJ24499.1

ABC-2 family transporter protein. (201 aa)

Predicted Functional Partners:

SEJ24526.1

0.947

SEJ24556.1

0.878

SEI97910.1

0.586

SEJ22635.1

0.555

SEJ21289.1

0.541

SEJ24632.1

0.536

SEJ24604.1

0.532

SEJ31490.1

0.511

SEJ31462.1

0.490

SEI82968.1

0.450

Your Current Organism:

Kandleria vitulina

NCBI taxonomy Id: 1630
Other names: ATCC 27783, CCUG 32236, CIP 103154, DSM 20405, K. vitulina, LMG 18931, LMG:18931, Lactobacillus vitulinus, NRRL B-14854

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEI82968.1	SEJ24499.1	SAMN05216514_10484	SAMN05216514_11633	Listeria/Bacterioides repeat-containing protein.	ABC-2 family transporter protein.	0.450
SEI97910.1	SEJ24499.1	SAMN05216514_10746	SAMN05216514_11633	Transposase DDE domain-containing protein.	ABC-2 family transporter protein.	0.586
SEJ21289.1	SEJ24499.1	SAMN05216514_11447	SAMN05216514_11633	N-acetylmuramoyl-L-alanine amidase.	ABC-2 family transporter protein.	0.541
SEJ21289.1	SEJ24526.1	SAMN05216514_11447	SAMN05216514_11634	N-acetylmuramoyl-L-alanine amidase.	ABC-2 type transport system ATP-binding protein.	0.472
SEJ22635.1	SEJ24499.1	SAMN05216514_11523	SAMN05216514_11633	Uncharacterized conserved protein, DUF885 familyt.	ABC-2 family transporter protein.	0.555
SEJ24499.1	SEI82968.1	SAMN05216514_11633	SAMN05216514_10484	ABC-2 family transporter protein.	Listeria/Bacterioides repeat-containing protein.	0.450
SEJ24499.1	SEI97910.1	SAMN05216514_11633	SAMN05216514_10746	ABC-2 family transporter protein.	Transposase DDE domain-containing protein.	0.586
SEJ24499.1	SEJ21289.1	SAMN05216514_11633	SAMN05216514_11447	ABC-2 family transporter protein.	N-acetylmuramoyl-L-alanine amidase.	0.541
SEJ24499.1	SEJ22635.1	SAMN05216514_11633	SAMN05216514_11523	ABC-2 family transporter protein.	Uncharacterized conserved protein, DUF885 familyt.	0.555
SEJ24499.1	SEJ24526.1	SAMN05216514_11633	SAMN05216514_11634	ABC-2 family transporter protein.	ABC-2 type transport system ATP-binding protein.	0.947
SEJ24499.1	SEJ24556.1	SAMN05216514_11633	SAMN05216514_11635	ABC-2 family transporter protein.	GntR family transcriptional regulator.	0.878
SEJ24499.1	SEJ24604.1	SAMN05216514_11633	SAMN05216514_11636	ABC-2 family transporter protein.	ABC-2 type transport system permease protein.	0.532
SEJ24499.1	SEJ24632.1	SAMN05216514_11633	SAMN05216514_11637	ABC-2 family transporter protein.	ABC-2 type transport system ATP-binding protein.	0.536
SEJ24499.1	SEJ31462.1	SAMN05216514_11633	SAMN05216514_12317	ABC-2 family transporter protein.	Hypothetical protein.	0.490
SEJ24499.1	SEJ31490.1	SAMN05216514_11633	SAMN05216514_12318	ABC-2 family transporter protein.	Molecular chaperone DnaJ.	0.511
SEJ24526.1	SEJ21289.1	SAMN05216514_11634	SAMN05216514_11447	ABC-2 type transport system ATP-binding protein.	N-acetylmuramoyl-L-alanine amidase.	0.472
SEJ24526.1	SEJ24499.1	SAMN05216514_11634	SAMN05216514_11633	ABC-2 type transport system ATP-binding protein.	ABC-2 family transporter protein.	0.947
SEJ24526.1	SEJ24556.1	SAMN05216514_11634	SAMN05216514_11635	ABC-2 type transport system ATP-binding protein.	GntR family transcriptional regulator.	0.952
SEJ24526.1	SEJ24604.1	SAMN05216514_11634	SAMN05216514_11636	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system permease protein.	0.606
SEJ24526.1	SEJ24632.1	SAMN05216514_11634	SAMN05216514_11637	ABC-2 type transport system ATP-binding protein.	ABC-2 type transport system ATP-binding protein.	0.595