STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0014Hypothetical protein containing SAM domain 1; COG1244. (324 aa)    
Predicted Functional Partners:
CL1_1211
Hypothetical protein; COG1549.
 
     0.786
rpl40e
50S ribosomal protein L40e; COG1552; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.677
CL1_1232
Hypothetical protein containing ACT domain 2; COG2150.
  
     0.665
CL1_0646
Hypothetical protein containing metal dependent hydrolase domain; COG1831.
  
     0.658
surE
Putative stationary phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.657
CL1_1644
Hypothetical protein; COG1860; Belongs to the UPF0179 family.
  
     0.649
CL1_0151
Putative ATP-dependent protease Lon; COG1067; Belongs to the peptidase S16 family.
  
     0.607
CL1_2004
Hypothetical protein; COG1395.
  
     0.605
CL1_0189
Hypothetical protein containing ACT domain 1; COG2150.
 
     0.595
CL1_0007
2-oxoglutarate ferredoxin oxidoreductase subunit gamma 1; COG1014.
       0.587
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.