STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0025Manganese/zinc ABC transporter periplasmic protein; COG0803. (331 aa)    
Predicted Functional Partners:
CL1_1912
ABC type manganese/zinc transporter ATPase; COG1121.
 
  
 0.978
CL1_1911
ABC type manganese/zinc transporter permease; COG1108.
 
  
 0.963
CL1_0712
Metal ion-dependent transcription regulator, DtxR family; COG1321.
  
  
 0.695
rps14
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.680
CL1_1851
Cadmium-translocating P-type ATPase; COG2217.
     
 0.656
CL1_0026
Hypothetical protein.
       0.642
CL1_1898
Amino acid transporter; COG0531.
     
 0.575
mptA
GTP cyclohydrolase; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin.
 
  
 0.442
CL1_1004
Transcription regulator, ArsR family 6; COG1846.
 
  
 0.410
CL1_0106
iron(II) transport system protein A; COG1918.
 
   
 0.408
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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