STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0061Hypothetical protein. (297 aa)    
Predicted Functional Partners:
CL1_0063
Hypothetical protein.
 
     0.946
CL1_0060
Hypothetical protein.
 
     0.944
CL1_0062
Hypothetical protein.
 
     0.937
CL1_0058
Hypothetical protein.
       0.489
CL1_0057
Hypothetical protein; COG0426.
       0.487
CL1_0059
Hypothetical protein.
       0.487
CL1_1483
H/ACA RNA-protein complex component Gar1; COG3277.
  
     0.410
CL1_1649
Putative Rad3-related DNA helicase; COG1199.
  
     0.410
CL1_0727
Putative metal-dependent phosphohydrolase; COG3294.
  
     0.401
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.