STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0073Permease, Auxin efflux carrier protein-like protein; COG0679. (293 aa)    
Predicted Functional Partners:
CL1_0072
Deblocking aminopeptidase, peptidase M42 family; COG1363.
       0.864
CL1_0077
Hypothetical protein.
       0.717
CL1_0074
Multidrug efflux transporter protein AcrB; COG2409.
       0.644
CL1_0078
Hypothetical protein; COG3595.
       0.630
CL1_1264
NADP-dependent malic enzyme; COG0281.
  
  
 0.564
CL1_1345
Hypothetical protein containing peptidase M48 domain; COG0501.
  
  
 0.564
htpX
Putative heat shock protein HtpX 1; COG0501; Belongs to the peptidase M48B family.
  
  
 0.564
htpX-2
Putative heat shock protein HtpX 2; COG0501; Belongs to the peptidase M48B family.
  
  
 0.564
CL1_0079
Major facilitator superfamily permease 1; COG0477.
       0.552
hisI
Hypothetical protein; COG0139; In the N-terminal section; belongs to the PRA-CH family.
  
    0.485
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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