Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0089Hypothetical protein; COG2306. (162 aa)    
Predicted Functional Partners:
glyS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly).
       0.876
CL1_0087
Hypothetical protein; COG1872; Belongs to the UPF0235 family.
       0.658
CL1_0091
Pullulanase type II; COG0366.
       0.470
CL1_0507
Glycosyl transferase family protein 6; COG1807.
  
     0.456
CL1_0376
CRISPR-associated CXXC_CXXC protein Cst1.
  
     0.448
CL1_0092
Small nuclear ribonucleoprotein; COG1958; Belongs to the snRNP Sm proteins family.
       0.420
CL1_1103
Hypothetical protein; COG0535.
  
     0.404
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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