STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0104Putative ATPase 1; COG0037. (273 aa)    
Predicted Functional Partners:
CL1_0103
Hydrogenase expression/formation protein HypE 1; COG0309.
   
   0.831
CL1_0105
Hypothetical protein; COG4818.
 
     0.767
CL1_0920
Hypothetical protein; COG0535.
 
     0.618
CL1_0924
Hypothetical protein; COG0037.
 
     0.610
CL1_0507
Glycosyl transferase family protein 6; COG1807.
 
     0.606
CL1_0415
Phospho-sugar mutase-like protein; COG1109.
 
 
 
 0.583
CL1_1786
Hypothetical protein; COG2014.
  
    0.573
CL1_0106
iron(II) transport system protein A; COG1918.
     
 0.563
CL1_0897
Hypothetical protein containing SAM domain 5; COG0500.
 
 
 0.552
CL1_0107
iron(II) transport system protein B; COG0370.
     
 0.542
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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