STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0106iron(II) transport system protein A; COG1918. (75 aa)    
Predicted Functional Partners:
CL1_0107
iron(II) transport system protein B; COG0370.
 
  
 0.993
CL1_0108
Hypothetical protein containing DNA binding domain; COG4189.
       0.907
CL1_0105
Hypothetical protein; COG4818.
     
 0.820
CL1_0109
Putative sugar-phosphate nucleotidyltransferase; COG1208.
       0.799
CL1_0104
Putative ATPase 1; COG0037.
     
 0.794
CL1_0103
Hydrogenase expression/formation protein HypE 1; COG0309.
       0.793
CL1_1228
Universal stress protein 1; COG0589.
  
  
 0.414
CL1_0712
Metal ion-dependent transcription regulator, DtxR family; COG1321.
  
  
 0.408
CL1_0816
Chaperonin subunit beta; COG0459; Belongs to the TCP-1 chaperonin family.
     
 0.408
CL1_1895
Putative peroxiredoxin, bacterioferritin comigratory protein; COG1225.
     
 0.408
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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