Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0123Putative aspartate aminotransferase 1; COG0436. (389 aa)    
Predicted Functional Partners:
CL1_0121
Putative carbamoyl transferase, NodU family; COG2192.
       0.741
CL1_0659
Homoserine dehydrogenase; COG0460.
 
 
 0.477
CL1_1601
Asparagine synthase; COG0367.
  
  
 0.456
CL1_0122
Putative ATPase (AAA+ superfamily) 2; COG1672.
       0.453
CL1_0698
DNA polymerase, family B; COG0417.
     
 0.416
CL1_2024
Putative aminotransferase 1; COG0079.
 
  
 0.416
CL1_0563
Bifunctional short chain isoprenyl diphosphate synthase; COG0142; Belongs to the FPP/GGPP synthase family.
 
  
 0.412
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.