STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0134Putative drug/metabolite transporter 1; COG0697. (289 aa)    
Predicted Functional Partners:
CL1_0135
Putative transcription regulator containing CBS-domain; COG3620.
 
   
 0.873
CL1_0133
Hypothetical protein.
       0.782
CL1_0132
Phosphoesterase; COG0618.
 
    0.697
CL1_1333
L-asparaginase; COG1446.
 
   
 0.547
CL1_1334
Hypothetical protein; COG0477.
  
  
 0.508
CL1_1335
Hypothetical protein; COG2516.
       0.483
CL1_1256
Hypothetical protein; COG0457.
 
 
 0.413
CL1_0948
Hypothetical protein; COG0727.
 
    0.408
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.