STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0137Iron (III) ABC transporter periplasmic-binding protein; COG0614. (625 aa)    
Predicted Functional Partners:
CL1_1306
iron(III)-siderophore ABC transporter permease 2; COG0609.
 
 
 0.949
CL1_1240
iron(III)-siderophore ABC transporter permease 1; COG0609.
 
 
 0.946
CL1_1305
iron(III)-siderophore ABC transporter ATPase 2; COG1120.
 
 
 0.926
CL1_1239
iron(III)-siderophore ABC transporter ATPase 1; COG1120.
 
 
 0.912
CL1_0136
Hypothetical protein.
       0.563
CL1_0135
Putative transcription regulator containing CBS-domain; COG3620.
       0.540
CL1_0138
Hypothetical protein; COG0556.
       0.536
CL1_0139
Hypothetical protein.
       0.509
CL1_1686
iron(III) ABC transporter permease; COG1178.
  
  
 0.441
hisI
Hypothetical protein; COG0139; In the N-terminal section; belongs to the PRA-CH family.
   
   0.436
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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