STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0142Cytosolic NiFe-hydrogenase subunit gamma; COG0543. (294 aa)    
Predicted Functional Partners:
CL1_0141
Cytosolic NiFe-hydrogenase subunit beta; COG1145.
 
 0.999
CL1_0143
Cytosolic NiFe-hydrogenase subunit delta; COG1941.
 
 
 0.999
CL1_0641
Sulfhydrogenase II, beta chain; COG1145.
 
 0.998
CL1_0144
Cytosolic NiFe-hydrogenase subunit alpha; COG3259.
 
 
 0.994
CL1_0644
Sulfhydrogenase II, alpha chain; COG3259.
 
 
 0.976
CL1_0643
Sulfhydrogenase II, delta chain; COG1941.
 
 
 0.975
CL1_0642
Sulfhydrogenase II, gamma chain; COG0543.
  
  
 
0.905
CL1_0145
Hypothetical protein.
       0.857
vapC-3
Hypothetical protein containing PIN domain 10; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.834
CL1_0147
Hydrogenase-specific maturation endopeptidase; COG0680.
  
    0.825
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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