STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0147Hydrogenase-specific maturation endopeptidase; COG0680. (141 aa)    
Predicted Functional Partners:
CL1_0144
Cytosolic NiFe-hydrogenase subunit alpha; COG3259.
 
  
 0.755
CL1_0143
Cytosolic NiFe-hydrogenase subunit delta; COG1941.
 
  
 0.734
CL1_0145
Hypothetical protein.
       0.688
vapC-3
Hypothetical protein containing PIN domain 10; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.685
CL1_0141
Cytosolic NiFe-hydrogenase subunit beta; COG1145.
 
     0.652
CL1_0415
Phospho-sugar mutase-like protein; COG1109.
 
     0.638
CL1_0142
Cytosolic NiFe-hydrogenase subunit gamma; COG0543.
  
    0.615
CL1_1256
Hypothetical protein; COG0457.
 
     0.554
CL1_0507
Glycosyl transferase family protein 6; COG1807.
  
     0.550
CL1_1836
Rubrerythrin-like protein 4; COG1633.
  
     0.502
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.