STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0149ABC-type transport involved in Fe -S cluster assembly, permease component; COG0719. (445 aa)    
Predicted Functional Partners:
CL1_0150
ABC-type transport involved in Fe -S cluster assembly, ATPase component; COG0396.
 
 0.999
CL1_0492
Putative cysteine desulfurase; COG0520.
 
 
 0.979
CL1_1353
Hypothetical protein; COG2151.
 
   
 0.702
CL1_1783
Putative dinitrogenase iron-molybdenum cofactor biosynthesis protein 1; COG1433.
  
  
 0.638
CL1_0151
Putative ATP-dependent protease Lon; COG1067; Belongs to the peptidase S16 family.
  
  
 0.619
CL1_0148
Hypothetical protein.
       0.536
CL1_0289
Hypothetical protein containing metallo-hydrolase/oxidoreductase domain; COG1237.
       0.520
CL1_0107
iron(II) transport system protein B; COG0370.
     
 0.430
CL1_1785
Putative dinitrogenase iron-molybdenum cofactor biosynthesis protein 2; COG1433.
  
  
 0.421
CL1_0013
2-oxoglutarate ferredoxin oxidoreductase subunit delta; COG1146.
     
 0.420
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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