STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0155Transcription regulator, ArsR family 2; COG0640. (125 aa)    
Predicted Functional Partners:
CL1_0156
Putative NTP pyrophosphohydrolase MazG-related, YpjD type; COG1694.
     
 0.947
CL1_0154
Metalloprotease containing JAB1/MPN domain; COG1310.
       0.849
CL1_0157
Putative transcription regulator, AsnC family 1; COG1522.
 
  
 0.842
CL1_0153
Endoribonuclease L-PSP, YjgF-like protein; COG0251.
     
 0.734
CL1_0158
Hypothetical protein; COG1836.
       0.729
CL1_0152
Hypothetical protein.
       0.714
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.592
CL1_1386
Transcription regulator, AsnC family 6; COG1522.
   
  
 0.408
CL1_0386
Transcription regulator, ArsR family 5; COG1777.
      
 0.407
CL1_1414
Indolepyruvate ferredoxin oxidoreductase, beta subunit 2; COG1014.
     
 0.407
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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