STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0157Putative transcription regulator, AsnC family 1; COG1522. (149 aa)    
Predicted Functional Partners:
CL1_0155
Transcription regulator, ArsR family 2; COG0640.
 
  
 0.653
CL1_0158
Hypothetical protein; COG1836.
       0.649
CL1_0156
Putative NTP pyrophosphohydrolase MazG-related, YpjD type; COG1694.
 
     0.637
CL1_1690
Transcription regulator, Lrp/AsnC family 2; COG1522.
  
     0.467
CL1_0154
Metalloprotease containing JAB1/MPN domain; COG1310.
     
 0.463
CL1_0153
Endoribonuclease L-PSP, YjgF-like protein; COG0251.
  
    0.410
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.