Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CL1_0230Ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome. (212 aa)    
Predicted Functional Partners:
CL1_0947
Hypothetical protein containing ribosome biogenesis factor; COG1374.
   
 
 0.966
CL1_0231
Putative KEOPS complex Pcc1-like subunit; COG2892.
  
    0.924
rpl30
50S ribosomal protein L30; COG1841.
   
 
 0.923
rps8e
30S ribosomal protein S8e; COG2007.
   
 
 0.918
rpoP
DNA-directed RNA polymerase subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family.
  
    0.915
CL1_0288
Putative GTP-binding protein; COG1084.
   
 
 0.906
rpl37ae
50S ribosomal protein L37Ae; Binds to the 23S rRNA.
 
 
   0.899
rpl18a
50S ribosomal protein LX; COG2157.
 
   0.895
CL1_1401
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; COG1498.
  
   0.893
eif6
Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
  
 
 0.888
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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