STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0272Glycosyl transferase family protein 1; COG0438. (407 aa)    
Predicted Functional Partners:
CL1_0273
Putative glycoside hydrolase/deacetylase; COG0726.
 
  
 0.850
CL1_0271
Hypothetical protein; COG0392.
 
  
 0.827
CL1_0275
Hypothetical protein.
       0.687
CL1_0274
Putative pyruvate-formate lyase-activating enzyme; COG1180.
       0.686
CL1_0269
Phosphohydrolase; COG1379.
 
     0.614
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.553
CL1_0268
Chloride channel protein; COG0038.
       0.542
CL1_0748
Glycosyl transferase family 2 protein 2; COG0463.
 
  
 0.515
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
 
  
 0.508
CL1_0109
Putative sugar-phosphate nucleotidyltransferase; COG1208.
 
 
 0.482
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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