CL1_0296 protein (Thermococcus cleftensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CL1_0296

Cobalt transporter ATP-binding protein; COG1122. (286 aa)

Predicted Functional Partners:

CL1_1695

0.985

CL1_1697

0.934

CL1_1696

0.839

CL1_0295

0.825

CL1_0464

0.818

CL1_0462

0.707

map

0.656

CL1_1121

0.647

CL1_0463

0.604

CL1_1478

0.533

Your Current Organism:

Thermococcus cleftensis

NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CL1_0295	CL1_0296	CL1_0295	CL1_0296	Putative potassium uptake protein; COG0168.	Cobalt transporter ATP-binding protein; COG1122.	0.825
CL1_0295	map	CL1_0295	CL1_0294	Putative potassium uptake protein; COG0168.	Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.	0.641
CL1_0296	CL1_0295	CL1_0296	CL1_0295	Cobalt transporter ATP-binding protein; COG1122.	Putative potassium uptake protein; COG0168.	0.825
CL1_0296	CL1_0462	CL1_0296	CL1_0462	Cobalt transporter ATP-binding protein; COG1122.	Cobalt ABC transporter permease, CbiM; COG0310.	0.707
CL1_0296	CL1_0463	CL1_0296	CL1_0463	Cobalt transporter ATP-binding protein; COG1122.	Cobalt ABC transport protein, CbiN; COG0310.	0.604
CL1_0296	CL1_0464	CL1_0296	CL1_0464	Cobalt transporter ATP-binding protein; COG1122.	Cobalt ABC transporter permease 1, CbiQ; COG0619.	0.818
CL1_0296	CL1_1121	CL1_0296	CL1_1121	Cobalt transporter ATP-binding protein; COG1122.	Hypothetical protein; COG4720.	0.647
CL1_0296	CL1_1478	CL1_0296	CL1_1478	Cobalt transporter ATP-binding protein; COG1122.	ABC type multidrug transporter ATPase 1; COG1131.	0.533
CL1_0296	CL1_1695	CL1_0296	CL1_1695	Cobalt transporter ATP-binding protein; COG1122.	Cobalt ABC transporter permease 2, CbiQ; COG0619.	0.985
CL1_0296	CL1_1696	CL1_0296	CL1_1696	Cobalt transporter ATP-binding protein; COG1122.	Cobalt ABC transporter ATPase 2; COG1122.	0.839
CL1_0296	CL1_1697	CL1_0296	CL1_1697	Cobalt transporter ATP-binding protein; COG1122.	Putative biotin biosynthesis protein BioY; COG1268.	0.934
CL1_0296	map	CL1_0296	CL1_0294	Cobalt transporter ATP-binding protein; COG1122.	Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.	0.656
CL1_0462	CL1_0296	CL1_0462	CL1_0296	Cobalt ABC transporter permease, CbiM; COG0310.	Cobalt transporter ATP-binding protein; COG1122.	0.707
CL1_0462	CL1_0463	CL1_0462	CL1_0463	Cobalt ABC transporter permease, CbiM; COG0310.	Cobalt ABC transport protein, CbiN; COG0310.	0.975
CL1_0462	CL1_0464	CL1_0462	CL1_0464	Cobalt ABC transporter permease, CbiM; COG0310.	Cobalt ABC transporter permease 1, CbiQ; COG0619.	0.997
CL1_0462	CL1_1695	CL1_0462	CL1_1695	Cobalt ABC transporter permease, CbiM; COG0310.	Cobalt ABC transporter permease 2, CbiQ; COG0619.	0.820
CL1_0462	CL1_1696	CL1_0462	CL1_1696	Cobalt ABC transporter permease, CbiM; COG0310.	Cobalt ABC transporter ATPase 2; COG1122.	0.786
CL1_0463	CL1_0296	CL1_0463	CL1_0296	Cobalt ABC transport protein, CbiN; COG0310.	Cobalt transporter ATP-binding protein; COG1122.	0.604
CL1_0463	CL1_0462	CL1_0463	CL1_0462	Cobalt ABC transport protein, CbiN; COG0310.	Cobalt ABC transporter permease, CbiM; COG0310.	0.975
CL1_0463	CL1_0464	CL1_0463	CL1_0464	Cobalt ABC transport protein, CbiN; COG0310.	Cobalt ABC transporter permease 1, CbiQ; COG0619.	0.990