CL1_0312 protein (Thermococcus cleftensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CL1_0312

Hypothetical protein. (438 aa)

Predicted Functional Partners:

CL1_0313

0.818

csl4

0.566

CL1_0310

0.566

rpoL

0.566

Your Current Organism:

Thermococcus cleftensis

NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CL1_0310	CL1_0312	CL1_0310	CL1_0312	Hypothetical protein; COG3286.	Hypothetical protein.	0.566
CL1_0310	CL1_0313	CL1_0310	CL1_0313	Hypothetical protein; COG3286.	Hypothetical protein containing RNase III domain.	0.602
CL1_0310	csl4	CL1_0310	CL1_0309	Hypothetical protein; COG3286.	Hypothetical protein containing nucleic acid -binding domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	0.818
CL1_0310	rpoL	CL1_0310	CL1_0311	Hypothetical protein; COG3286.	DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	0.840
CL1_0312	CL1_0310	CL1_0312	CL1_0310	Hypothetical protein.	Hypothetical protein; COG3286.	0.566
CL1_0312	CL1_0313	CL1_0312	CL1_0313	Hypothetical protein.	Hypothetical protein containing RNase III domain.	0.818
CL1_0312	csl4	CL1_0312	CL1_0309	Hypothetical protein.	Hypothetical protein containing nucleic acid -binding domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	0.566
CL1_0312	rpoL	CL1_0312	CL1_0311	Hypothetical protein.	DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	0.566
CL1_0313	CL1_0310	CL1_0313	CL1_0310	Hypothetical protein containing RNase III domain.	Hypothetical protein; COG3286.	0.602
CL1_0313	CL1_0312	CL1_0313	CL1_0312	Hypothetical protein containing RNase III domain.	Hypothetical protein.	0.818
CL1_0313	csl4	CL1_0313	CL1_0309	Hypothetical protein containing RNase III domain.	Hypothetical protein containing nucleic acid -binding domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	0.602
CL1_0313	rpoL	CL1_0313	CL1_0311	Hypothetical protein containing RNase III domain.	DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	0.602
csl4	CL1_0310	CL1_0309	CL1_0310	Hypothetical protein containing nucleic acid -binding domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	Hypothetical protein; COG3286.	0.818
csl4	CL1_0312	CL1_0309	CL1_0312	Hypothetical protein containing nucleic acid -binding domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	Hypothetical protein.	0.566
csl4	CL1_0313	CL1_0309	CL1_0313	Hypothetical protein containing nucleic acid -binding domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	Hypothetical protein containing RNase III domain.	0.602
csl4	rpoL	CL1_0309	CL1_0311	Hypothetical protein containing nucleic acid -binding domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	0.899
rpoL	CL1_0310	CL1_0311	CL1_0310	DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	Hypothetical protein; COG3286.	0.840
rpoL	CL1_0312	CL1_0311	CL1_0312	DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	Hypothetical protein.	0.566
rpoL	CL1_0313	CL1_0311	CL1_0313	DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	Hypothetical protein containing RNase III domain.	0.602
rpoL	csl4	CL1_0311	CL1_0309	DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.	Hypothetical protein containing nucleic acid -binding domain; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	0.899