STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0325AP endonuclease; COG1082. (268 aa)    
Predicted Functional Partners:
CL1_0826
Hypothetical protein containing oxidoreductase-domain; COG0673.
  
  
 0.842
CL1_0326
Putative endopeptidase IV; COG0616.
       0.641
CL1_0365
Bifunctional D-arabino 3-hexulose-6-phosphate formaldehyde lyase/phosphohexuloisomerase; COG0794.
 
    0.612
CL1_0507
Glycosyl transferase family protein 6; COG1807.
 
     0.609
CL1_1482
Hypothetical protein containing ribokinase-like domain 3; COG0524.
 
  
 0.595
CL1_0328
Hypothetical protein; COG0628.
  
    0.583
CL1_1233
Hypothetical protein containing ribokinase-like domain 2; COG0524; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.582
CL1_0327
Hypothetical protein.
       0.579
CL1_1815
CRISPR-associated protein Cas5; COG1688.
  
     0.571
CL1_0366
Putative arginase; COG0010; Belongs to the arginase family.
 
     0.569
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.