STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0366Putative arginase; COG0010; Belongs to the arginase family. (241 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
  
 
 0.944
pdaD
Pyruvoyl-dependent arginine decarboxylase; COG1945; Belongs to the PdaD family.
 
  
 0.937
CL1_0263
Agmatinase; COG0010; Belongs to the arginase family.
  
  
0.922
CL1_0367
Hypothetical protein; COG1645.
       0.818
CL1_0368
Transcription regulator, ArsR family 4; COG4742.
       0.818
CL1_0365
Bifunctional D-arabino 3-hexulose-6-phosphate formaldehyde lyase/phosphohexuloisomerase; COG0794.
       0.722
CL1_0507
Glycosyl transferase family protein 6; COG1807.
 
  
 0.702
CL1_0415
Phospho-sugar mutase-like protein; COG1109.
 
  
 0.681
CL1_0361
Hypothetical protein.
 
     0.640
CL1_0359
RNA binding protein containing KH domain; COG0195.
 
    0.604
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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